This function takes a given aquatic (egg, larval, pupal) stage and sums over the genotypes, returning summary trajectories by Erlang-distributed stage.
base_aquatic_stage(out, spn_P, elp)
| out | the output of |
|---|---|
| spn_P | the places of the SPN, see details |
| elp | stage to summarize, one of: "egg", "larvae", "pupae" |
a 3 to 5 column dataframe for plotting with ggplot2
This function is the base function for summarize_eggs_stage,
summarize_larvae_stage, and summarize_pupae_stage.
The places (spn_P) object is generated from one of the following:
spn_P_lifecycle_node, spn_P_lifecycle_network,
spn_P_epiSIS_node, spn_P_epiSIS_network,
spn_P_epiSEIR_node, or spn_P_epiSEIR_network.
The return object depends on the data provided. If the simulation was only 1 node,
then no node designation is returned. If only one repetition was performed,
no rep designation is returned. Columns always returned include: time,
Erlang-stage, and value.