Patch.RdA Patch is a single well-mixed population that is the smallest unit of simulation for MGDrivE.
An R6Class generator object
patchID: integer ID of this patch
genotypesID: character vector of genotypes
timeAq: integer vector of length 3 specifying the length of each aquatic stage
numPatches: integer, total number of patches in this simulation
adultEQ: integer, total adult population in this patch for the duration of the simulation
larvalEQ: integer, total larval population in this patch for the duration of the simulation
muAq: double vector, length 3, daily death rate for each aquatic stage
alpha: double, density-dependent centering parameter, see parameterizeMGDrivE
adultRatioF: named double vector, distribution of adult female genotypes, see parameterizeMGDrivE
adultRatioM: named double vector, distribution of adult male genotypes, see parameterizeMGDrivE
larvalRatio: named double vector, distribution of all aquatic genotypes, see parameterizeMGDrivE
eggReleases: egg release schedule for this patch, see basicRepeatedReleases
maleReleases: male release schedule for this patch, see basicRepeatedReleases
femaleReleases: female release schedule for this patch, see basicRepeatedReleases
matedFemaleReleases: mated females release schedule for this patch, see basicRepeatedReleases
set_NetworkPointer: see set_NetworkPointer_Patch
get_femalePopulation: see get_femalePop_Patch
get_malePopulation: see get_malePop_Patch
initialPopulation: see set_initialPopulation_Patch
setPopulation: see set_population_deterministic_Patch or set_population_stochastic_Patch
reset: see reset_Patch
oneDay_initOutput: see oneDay_initOutput_Patch
oneDay_writeOutput: see oneDay_writeOutput_Patch
oneDay_migrationIn: see oneDay_migrationIn_Patch
oneDay_PopDynamics: see oneDay_PopDynamics_Patch
oneDay_adultD: see oneDay_adultDeath_deterministic_Patch or oneDay_adultDeath_stochastic_Patch
oneDay_pupaDM: see oneDay_pupaDM_deterministic_Patch or oneDay_pupaDM_stochastic_Patch
oneDay_larvaDM: see oneDay_larvaDM_deterministic_Patch or oneDay_larvaDM_stochastic_Patch
oneDay_eggDM: see oneDay_eggDM_deterministic_Patch or oneDay_eggDM_stochastic_Patch
oneDay_pupation: see oneDay_pupation_deterministic_Patch or oneDay_pupation_stochastic_Patch
oneDay_releases: see oneDay_releases_Patch
oneDay_releaseEggs: see oneDay_eggReleases_Patch
oneDay_mating: see oneDay_mating_deterministic_Patch or oneDay_mating_stochastic_Patch
oneDay_layEggs: see oneDay_oviposit_deterministic_Patch or oneDay_oviposit_stochastic_Patch
patchID: integer ID of this patch
popAquatic: matrix, nGenotype x sum(timeAquatic), holding all eggs, larva, and pupa
popMale: vector, nGenotype x 1, holds adult males
popFemale: matrix, nGenotype x nGenotype, holds mated adult females
popHolder: vector, nGenotype x 1, temporary population storage
popPupSex: vector, nGenotype x 1, used in stochastic pupation as another temporary population
popUnmated: vector, nGenotype x 1, holds unmated females
popAquatict0: matrix, nGenotype x sum(timeAquatic), holding all eggs, larva, and pupa for reset, see reset_Patch
popMalet0: vector, nGenotype x 1, holds adult males for reset see reset_Patch
popFemalet0: matrix, nGenotype x nGenotype, holds mated adult females for reset see reset_Patch
eggReleases: list of egg releases for this patch. See oneDay_eggReleases_Patch
maleReleases: list of adult male releases for this patch. See oneDay_releases_Patch
femaleReleases: list of adult female releases for this patch. See oneDay_releases_Patch
matedFemaleReleases: list of mated adult female releases for this patch. See oneDay_releases_Patch
NetworkPointer: a reference to enclosing Network