Simulate Trajectory From one SPN Model — sim_trajectory_base

This is an internal function to sim_trajectory_CSV. It does the actual sampling once all of the functions have been checked and setup.

Usage

sim_trajectory_base_CSV(
  x0,
  times,
  stepFun,
  folders,
  stage,
  events0 = NULL,
  batch = NULL,
  Sout = NULL,
  verbose = TRUE
)

x0: the initial marking of the SPN (initial state)
times: sequence of sampling times
stepFun: a sampling function
folders: vector of folders to write output
stage: vector of life-stages to print
events0: a data.frame of events (uses the same format as required in package deSolve for consistency, see events for more information)
batch: a list of batch migration events, created from batch_migration, may be set to NULL if not used
Sout: an optional matrix to track event firings
verbose: print a progress bar?

no return, prints .csv files into provided folders