Summarize Humans (One Node or Metapopulation Network, SEI Mosquitoes - SEIR Humans)

Source: R/auxiliary-plot.R

For MGDrivE2 simulations of mosquito epidemiological dynamics in a node or network, this function summarizes human infection status, S, E, I, and R. It uses base_summarize_humans to do all of the work.

summarize_humans_epiSEIR(out)

Arguments

out

the output of sim_trajectory_R

Value

a 4 to 6 column dataframe for plotting with ggplot2

Details

The return object depends on the data provided. If the simulation was only 1 node, then no node designation is returned. If only one repetition was performed, no rep designation is returned. Columns always returned include: time, inf, genotype, and value.

For examples of using this function, see: vignette("seir-dynamics", package = "MGDrivE2")