For MGDrivE2 simulations of mosquito epidemiological dynamics in a node or network, this function summarizes human infection status, S, E, I, and R. It uses base_summarize_humans to do all of the work.




the output of sim_trajectory_R


a 4 to 6 column dataframe for plotting with ggplot2


The return object depends on the data provided. If the simulation was only 1 node, then no node designation is returned. If only one repetition was performed, no rep designation is returned. Columns always returned include: time, inf, genotype, and value.

For examples of using this function, see: vignette("seir-dynamics", package = "MGDrivE2")