Inheritance Cube: Split CRISPR Drive with 2 Resistance Alleles and male/female specific homing
Source:R/Cube-SplitDriveMF.R
cubeSplitDrive.Rd
This is a sex-specific version of a split CRISPR drive. At one locus is the Cas9, inherited in a Mendelian fashion. At a second, unlinked, locus are the gRNAs. When the two loci occur together, the gRNAs drive, with potential damaged alleles, but the Cas9 remains Mendelian. It is assumed that this is an autosomal drive. This drive corresponds to the confinable gene drive system developed by the Akbari lab.
Usage
cubeSplitDrive(
cM = 1,
chM = 0,
crM = 0,
ccM = cM,
cchM = chM,
ccrM = crM,
cF = 1,
chF = 0,
crF = 0,
ccF = cF,
cchF = chF,
ccrF = crF,
dW = 0,
dhW = 0,
drW = 0,
ddW = dW,
ddhW = dhW,
ddrW = drW,
eta = NULL,
phi = NULL,
omega = NULL,
xiF = NULL,
xiM = NULL,
s = NULL
)
Arguments
- cM
Cutting efficiency in males, one Cas9 allele
- chM
Homing efficiency in males, one Cas9 allele
- crM
Resistance efficiency in males, one Cas9 allele
- ccM
Cutting efficiency in males, two Cas9 alleles
- cchM
Homing efficiency in males, two Cas9 alleles
- ccrM
Resistance efficiency in males, two Cas9 alleles
- cF
Cutting efficiency in females, one Cas9 allele
- chF
Homing efficiency in females, one Cas9 allele
- crF
Resistance efficiency in females, one Cas9 allele
- ccF
Cutting efficiency in females, two Cas9 alleles
- cchF
Homing efficiency in females, two Cas9 alleles
- ccrF
Resistance efficiency in females, two Cas9 alleles
- dW
Maternal deposition cutting, one Cas9 allele
- dhW
Maternal deposition homing, one Cas9 allele
- drW
Maternal deposition resistance, one Cas9 allele
- ddW
Maternal deposition cutting, two Cas9 alleles
- ddhW
Maternal deposition homing, two Cas9 alleles
- ddrW
Maternal deposition resistance, two Cas9 alleles
- eta
Genotype-specific mating fitness
- phi
Genotype-specific sex ratio at emergence
- omega
Genotype-specific multiplicative modifier of adult mortality
- xiF
Genotype-specific female pupatory success
- xiM
Genotype-specific male pupatory success
- s
Genotype-specific fractional reduction(increase) in fertility